If the invertebrates are sensitive to light, you could try separating them from their detritus the way people separate brine shrimp from their egg cases. Cover most of the container they're in with some sort of opaque material. You can tape thick construction paper over it or wrap it in a cloth. The more opaque, the better. Then you shine light on only one small area. Brine shrimp all swim towards and stay in that lit area because they're algae eaters and the algae grows only at the surface of the deep lakes they live in, in the wild. You end up with all your tiny invertebrates crowded together in the lit area, with very few of them in the dark regions.
Or you could bait and trap the invertebrates. Put some cat or dog food inside a container whose opening is designed like the opening of a bristle worm trap. It's one-way, so if the bugs go in, they can't come out. It'll take them a couple hours, but eventually they'll all be inside the container, munching on the kibble.
Both methods take a little bit of time as they depend upon the locomotion of the invertebrates to do the separation for you. Using a filter like Newt suggested is much faster. You could use either a net or your choice of mesh size of fiberglass screen. When I was making my fry separators, I bought fiberglass screen at Home Depot for $5 and chose the 1/8" mesh size. Image:
http://www.homedepot...ea8a054_300.jpg
Edited by EricaWieser, 30 September 2011 - 05:18 PM.